Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs28578314 | chr20:61471768 | G/C | 3.38E-8 | 390 | 15.83 | 15.67 | 7.8 | KM Plot |
| LGG | rs2860519 | chr11:61179728 | C/T | 9.71E-5 | 407 | 15.63 | 17.7 | 14.5 | KM Plot |
| LGG | rs28613367 | chr20:61471547 | C/G | 4.62E-6 | 390 | 15.73 | 16.27 | 5.5 | KM Plot |
| LGG | rs28617265 | chr22:42853208 | C/A | 1.41E-9 | 403 | 15.3 | 17.4 | 4.4 | KM Plot |
| LGG | rs2866619 | chr16:76252142 | G/A | 7.6E-7 | 404 | 15.25 | 16.5 | 5.85 | KM Plot |
| LGG | rs28670302 | chr16:67880834 | C/T | 2.16E-11 | 407 | 15.17 | 18.37 | 6.47 | KM Plot |
| LGG | rs28680734 | chr21:43237585 | T/C | 4.8E-6 | 392 | 15.63 | 16.12 | 8 | KM Plot |
| LGG | rs28733124 | chr2:190527965 | A/T | 5.71E-6 | 394 | 15.57 | 10 | 5.32 | KM Plot |
| LGG | rs2875862 | chr20:3332367 | A/G | 1.13E-7 | 407 | 6.83 | 11.55 | 15.95 | KM Plot |
| LGG | rs28794608 | chr13:48533828 | G/C | 1.25E-5 | 406 | 15.37 | 15.22 | 4.17 | KM Plot |
| LGG | rs28802998 | chr9:94625560 | G/A | 6.99E-5 | 407 | 15.18 | 16.47 | 17.55 | KM Plot |
| LGG | rs2881889 | chr7:7570761 | A/G | 1.11E-16 | 406 | 2.23 | 14.93 | 15.37 | KM Plot |
| LGG | rs28840208 | chr10:63330559 | G/T | 2.85E-5 | 401 | 16.28 | 11.05 | 17.07 | KM Plot |
| LGG | rs28885472 | chr16:67829314 | C/T | 2.16E-11 | 407 | 15.17 | 18.37 | 6.47 | KM Plot |
| LGG | rs2891371 | chr10:33438368 | A/G | 0 | 406 | 15.03 | 18.43 | 5.93 | KM Plot |